Command-line interface overview
Purpose and capabilities of the Workbench command-line interface
Tag: CLI
Set up billing with pods in Verily Workbench
Associate your Workbench user profile with cloud billing and create a pod
Install and run the Workbench CLI
Getting started with installing and running the Workbench CLI
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Create a data collection with the Workbench CLI
How to create and manage a data collection via the Workbench CLI
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Basic usage
Examples of typical operations performed via the Verily Workbench CLI
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Get started with Nextflow on Verily Workbench
How to use Nextflow with the Workbench CLI
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Access, browse, save, and share data
How to access, browse, save, and share workspace data in Verily Workbench
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Workbench CLI commands
Detailed explanations about the Workbench CLI commands and their options
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Troubleshooting
Troubleshooting issues with your Verily Workbench configuration
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Manage organizations & users
Manage organizations and users in Workbench
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Git repositories in notebooks
Examples related to using Git repositories in your notebook apps with the Workbench CLI
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Work with workspace context environment variables
Using the workspace context environment variables via the Workbench CLI
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Access workspace files and folders from your cloud app
Accessing mounted workspace files and folders from your cloud app
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Use the Workbench CLI from a container
Building a custom container and using it to run Workbench CLI commands
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Nextflow
Examples related to running Nextflow workflows via the Workbench CLI
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Create container images in a workspace
How to use Cloud Build or Docker to create container images from within a workspace
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Use Dataproc (Spark) and Hail on Verily Workbench
How to use Dataproc (managed Spark) apps and run Hail on Verily Workbench